SDR39U1 protein (Macaca mulatta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

SDR39U1

Short chain dehydrogenase/reductase family 39U member 1. (293 aa)

Predicted Functional Partners:

TRMT2A

0.840

TUBGCP6

0.773

LHFPL2

0.769

SCARF1

0.701

ANKRD22

0.646

NCLN

0.646

NYNRIN

0.638

STOML1

0.635

DOCK9

0.608

DUSP3

0.604

Your Current Organism:

Macaca mulatta

NCBI taxonomy Id: 9544
Other names: M. mulatta, Rhesus monkey, rhesus macaque, rhesus macaques, rhesus monkeys

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ANKRD22	DOCK9	ENSMMUP00000000643	ENSMMUP00000024550	Ankyrin repeat domain 22.	Dedicator of cytokinesis 9; Belongs to the DOCK family.	0.435
ANKRD22	DUSP3	ENSMMUP00000000643	ENSMMUP00000075981	Ankyrin repeat domain 22.	Tyrosine-protein phosphatase domain-containing protein; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily.	0.458
ANKRD22	LHFPL2	ENSMMUP00000000643	ENSMMUP00000072760	Ankyrin repeat domain 22.	Lipoma HMGIC fusion partner-like 2 protein.	0.601
ANKRD22	SCARF1	ENSMMUP00000000643	ENSMMUP00000035451	Ankyrin repeat domain 22.	Scavenger receptor class F member 1.	0.771
ANKRD22	SDR39U1	ENSMMUP00000000643	ENSMMUP00000012444	Ankyrin repeat domain 22.	Short chain dehydrogenase/reductase family 39U member 1.	0.646
ANKRD22	TRMT2A	ENSMMUP00000000643	ENSMMUP00000026458	Ankyrin repeat domain 22.	tRNA (Uracil-5-)-methyltransferase homolog A; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	0.616
ANKRD22	TUBGCP6	ENSMMUP00000000643	ENSMMUP00000049511	Ankyrin repeat domain 22.	Tubulin gamma complex associated protein 6.	0.584
DOCK9	ANKRD22	ENSMMUP00000024550	ENSMMUP00000000643	Dedicator of cytokinesis 9; Belongs to the DOCK family.	Ankyrin repeat domain 22.	0.435
DOCK9	DUSP3	ENSMMUP00000024550	ENSMMUP00000075981	Dedicator of cytokinesis 9; Belongs to the DOCK family.	Tyrosine-protein phosphatase domain-containing protein; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily.	0.400
DOCK9	LHFPL2	ENSMMUP00000024550	ENSMMUP00000072760	Dedicator of cytokinesis 9; Belongs to the DOCK family.	Lipoma HMGIC fusion partner-like 2 protein.	0.567
DOCK9	SCARF1	ENSMMUP00000024550	ENSMMUP00000035451	Dedicator of cytokinesis 9; Belongs to the DOCK family.	Scavenger receptor class F member 1.	0.484
DOCK9	SDR39U1	ENSMMUP00000024550	ENSMMUP00000012444	Dedicator of cytokinesis 9; Belongs to the DOCK family.	Short chain dehydrogenase/reductase family 39U member 1.	0.608
DOCK9	TRMT2A	ENSMMUP00000024550	ENSMMUP00000026458	Dedicator of cytokinesis 9; Belongs to the DOCK family.	tRNA (Uracil-5-)-methyltransferase homolog A; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	0.602
DOCK9	TUBGCP6	ENSMMUP00000024550	ENSMMUP00000049511	Dedicator of cytokinesis 9; Belongs to the DOCK family.	Tubulin gamma complex associated protein 6.	0.544
DUSP3	ANKRD22	ENSMMUP00000075981	ENSMMUP00000000643	Tyrosine-protein phosphatase domain-containing protein; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily.	Ankyrin repeat domain 22.	0.458
DUSP3	DOCK9	ENSMMUP00000075981	ENSMMUP00000024550	Tyrosine-protein phosphatase domain-containing protein; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily.	Dedicator of cytokinesis 9; Belongs to the DOCK family.	0.400
DUSP3	LHFPL2	ENSMMUP00000075981	ENSMMUP00000072760	Tyrosine-protein phosphatase domain-containing protein; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily.	Lipoma HMGIC fusion partner-like 2 protein.	0.778
DUSP3	SCARF1	ENSMMUP00000075981	ENSMMUP00000035451	Tyrosine-protein phosphatase domain-containing protein; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily.	Scavenger receptor class F member 1.	0.567
DUSP3	SDR39U1	ENSMMUP00000075981	ENSMMUP00000012444	Tyrosine-protein phosphatase domain-containing protein; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily.	Short chain dehydrogenase/reductase family 39U member 1.	0.604
DUSP3	TRMT2A	ENSMMUP00000075981	ENSMMUP00000026458	Tyrosine-protein phosphatase domain-containing protein; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily.	tRNA (Uracil-5-)-methyltransferase homolog A; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.	0.619