Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LHX9LIM homeobox 9. (397 aa)    
Predicted Functional Partners:
LDB1
LIM domain-binding protein 1 isoform 1.
    
 0.942
SSBP3
Single stranded DNA binding protein 3.
    
 
 0.910
SSBP4
Single stranded DNA binding protein 4.
    
 
 0.772
LDB2
LID domain-containing protein.
    
 0.721
NR5A1
Nuclear receptor subfamily 5 group A member 1.
      
 0.630
DLX1
Homeobox protein DLX-1 isoform 1.
   
 
 0.595
GATA4
GATA binding protein 4.
    
 0.580
LMO3
Uncharacterized protein.
   
 
 0.571
EBF1
EBF transcription factor 1.
   
 
 0.571
LMO1
LIM domain only 1.
   
 
 0.571
Your Current Organism:
Macaca mulatta
NCBI taxonomy Id: 9544
Other names: M. mulatta, Rhesus monkey, rhesus macaque, rhesus macaques, rhesus monkeys
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