SYNCRIP protein (Macaca mulatta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Current Organism:

Macaca mulatta

NCBI taxonomy Id: 9544
Other names: M. mulatta, Rhesus monkey, rhesus macaque, rhesus macaques, rhesus monkeys

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ECH1	ENSMMUP00000052383	ENSMMUP00000072768	ENSMMUP00000052383	Heterogeneous nuclear ribonucleoprotein L.	Uncharacterized protein.	0.943
ECH1	F6W532_MACMU	ENSMMUP00000072768	ENSMMUP00000019437	Heterogeneous nuclear ribonucleoprotein L.	Uncharacterized protein.	0.932
ECH1	HNRNPA2B1	ENSMMUP00000072768	ENSMMUP00000004835	Heterogeneous nuclear ribonucleoprotein L.	Uncharacterized protein.	0.993
ECH1	HNRNPAB	ENSMMUP00000072768	ENSMMUP00000005328	Heterogeneous nuclear ribonucleoprotein L.	Heterogeneous nuclear ribonucleoprotein A/B isoform a.	0.901
ECH1	HNRNPC	ENSMMUP00000072768	ENSMMUP00000063078	Heterogeneous nuclear ribonucleoprotein L.	Heterogeneous nuclear ribonucleoproteins C1/C2 isoform a.	0.967
ECH1	HNRNPD	ENSMMUP00000072768	ENSMMUP00000074156	Heterogeneous nuclear ribonucleoprotein L.	Heterogeneous nuclear ribonucleoprotein D0 isoform a.	0.951
ECH1	HNRNPK	ENSMMUP00000072768	ENSMMUP00000080326	Heterogeneous nuclear ribonucleoprotein L.	Heterogeneous nuclear ribonucleoprotein K isoform a.	0.969
ECH1	HNRNPR	ENSMMUP00000072768	ENSMMUP00000014381	Heterogeneous nuclear ribonucleoprotein L.	Heterogeneous nuclear ribonucleoprotein R isoform 2.	0.978
ECH1	HNRNPU	ENSMMUP00000072768	ENSMMUP00000037521	Heterogeneous nuclear ribonucleoprotein L.	Heterogeneous nuclear ribonucleoprotein U.	0.976
ECH1	SYNCRIP	ENSMMUP00000072768	ENSMMUP00000016505	Heterogeneous nuclear ribonucleoprotein L.	Synaptotagmin binding cytoplasmic RNA interacting protein.	0.953
ENSMMUP00000052383	ECH1	ENSMMUP00000052383	ENSMMUP00000072768	Uncharacterized protein.	Heterogeneous nuclear ribonucleoprotein L.	0.943
ENSMMUP00000052383	F6W532_MACMU	ENSMMUP00000052383	ENSMMUP00000019437	Uncharacterized protein.	Uncharacterized protein.	0.853
ENSMMUP00000052383	HNRNPA2B1	ENSMMUP00000052383	ENSMMUP00000004835	Uncharacterized protein.	Uncharacterized protein.	0.978
ENSMMUP00000052383	HNRNPAB	ENSMMUP00000052383	ENSMMUP00000005328	Uncharacterized protein.	Heterogeneous nuclear ribonucleoprotein A/B isoform a.	0.843
ENSMMUP00000052383	HNRNPC	ENSMMUP00000052383	ENSMMUP00000063078	Uncharacterized protein.	Heterogeneous nuclear ribonucleoproteins C1/C2 isoform a.	0.887
ENSMMUP00000052383	HNRNPD	ENSMMUP00000052383	ENSMMUP00000074156	Uncharacterized protein.	Heterogeneous nuclear ribonucleoprotein D0 isoform a.	0.917
ENSMMUP00000052383	HNRNPR	ENSMMUP00000052383	ENSMMUP00000014381	Uncharacterized protein.	Heterogeneous nuclear ribonucleoprotein R isoform 2.	0.916
ENSMMUP00000052383	HNRNPU	ENSMMUP00000052383	ENSMMUP00000037521	Uncharacterized protein.	Heterogeneous nuclear ribonucleoprotein U.	0.957
ENSMMUP00000052383	SYNCRIP	ENSMMUP00000052383	ENSMMUP00000016505	Uncharacterized protein.	Synaptotagmin binding cytoplasmic RNA interacting protein.	0.926
F6W532_MACMU	ECH1	ENSMMUP00000019437	ENSMMUP00000072768	Uncharacterized protein.	Heterogeneous nuclear ribonucleoprotein L.	0.932