Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NID1Nidogen-1. (1247 aa)    
Predicted Functional Partners:
NID2
Nidogen 2.
  
0.982
LAMC1
Laminin subunit gamma-1.
   
 0.979
HSPG2
Heparan sulfate proteoglycan 2.
   
 0.944
LAMA4
Laminin subunit alpha 4.
   
 0.864
LAMA3
Laminin subunit alpha 3.
   
 0.832
FBLN1
Fibulin-1; Incorporated into fibronectin-containing matrix fibers. May play a role in cell adhesion and migration along protein fibers within the extracellular matrix (ECM). Could be important for certain developmental processes and contribute to the supramolecular organization of ECM architecture, in particular to those of basement membranes.
   
 
 0.785
AGRN
Agrin.
   
 0.784
MMP19
Matrix metallopeptidase 19.
   
 
 0.772
LAMB3
Laminin subunit beta 3.
   
 0.753
LAMC3
Laminin subunit gamma 3.
   
 0.749
Your Current Organism:
Macaca mulatta
NCBI taxonomy Id: 9544
Other names: M. mulatta, Rhesus monkey, rhesus macaque, rhesus macaques, rhesus monkeys
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