TRPT1 protein (Macaca mulatta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

TRPT1

tRNA phosphotransferase 1. (315 aa)

Predicted Functional Partners:

NUDT22

0.729

THYN1

0.666

PARP3

0.629

GDAP2

0.627

RTCB

0.621

NEURL4

0.608

XPOT

0.600

VKORC1L1

0.600

LOC114680148

0.555

MACROD1

0.553

Your Current Organism:

Macaca mulatta

NCBI taxonomy Id: 9544
Other names: M. mulatta, Rhesus monkey, rhesus macaque, rhesus macaques, rhesus monkeys

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GDAP2	MACROD1	ENSMMUP00000077582	ENSMMUP00000071612	Ganglioside-induced differentiation-associated protein 2 isoform a.	Macro domain-containing protein.	0.655
GDAP2	NEURL4	ENSMMUP00000077582	ENSMMUP00000008158	Ganglioside-induced differentiation-associated protein 2 isoform a.	Neuralized E3 ubiquitin protein ligase 4.	0.562
GDAP2	TRPT1	ENSMMUP00000077582	ENSMMUP00000016989	Ganglioside-induced differentiation-associated protein 2 isoform a.	tRNA phosphotransferase 1.	0.627
LOC114680148	MACROD1	ENSMMUP00000000602	ENSMMUP00000071612	Poly [ADP-ribose] polymerase.	Macro domain-containing protein.	0.431
LOC114680148	PARP3	ENSMMUP00000000602	ENSMMUP00000029228	Poly [ADP-ribose] polymerase.	Poly [ADP-ribose] polymerase.	0.554
LOC114680148	TRPT1	ENSMMUP00000000602	ENSMMUP00000016989	Poly [ADP-ribose] polymerase.	tRNA phosphotransferase 1.	0.555
MACROD1	GDAP2	ENSMMUP00000071612	ENSMMUP00000077582	Macro domain-containing protein.	Ganglioside-induced differentiation-associated protein 2 isoform a.	0.655
MACROD1	LOC114680148	ENSMMUP00000071612	ENSMMUP00000000602	Macro domain-containing protein.	Poly [ADP-ribose] polymerase.	0.431
MACROD1	NEURL4	ENSMMUP00000071612	ENSMMUP00000008158	Macro domain-containing protein.	Neuralized E3 ubiquitin protein ligase 4.	0.425
MACROD1	PARP3	ENSMMUP00000071612	ENSMMUP00000029228	Macro domain-containing protein.	Poly [ADP-ribose] polymerase.	0.605
MACROD1	TRPT1	ENSMMUP00000071612	ENSMMUP00000016989	Macro domain-containing protein.	tRNA phosphotransferase 1.	0.553
NEURL4	GDAP2	ENSMMUP00000008158	ENSMMUP00000077582	Neuralized E3 ubiquitin protein ligase 4.	Ganglioside-induced differentiation-associated protein 2 isoform a.	0.562
NEURL4	MACROD1	ENSMMUP00000008158	ENSMMUP00000071612	Neuralized E3 ubiquitin protein ligase 4.	Macro domain-containing protein.	0.425
NEURL4	TRPT1	ENSMMUP00000008158	ENSMMUP00000016989	Neuralized E3 ubiquitin protein ligase 4.	tRNA phosphotransferase 1.	0.608
NUDT22	TRPT1	ENSMMUP00000016990	ENSMMUP00000016989	Nudix hydrolase 22.	tRNA phosphotransferase 1.	0.729
PARP3	LOC114680148	ENSMMUP00000029228	ENSMMUP00000000602	Poly [ADP-ribose] polymerase.	Poly [ADP-ribose] polymerase.	0.554
PARP3	MACROD1	ENSMMUP00000029228	ENSMMUP00000071612	Poly [ADP-ribose] polymerase.	Macro domain-containing protein.	0.605
PARP3	TRPT1	ENSMMUP00000029228	ENSMMUP00000016989	Poly [ADP-ribose] polymerase.	tRNA phosphotransferase 1.	0.629
RTCB	TRPT1	ENSMMUP00000008846	ENSMMUP00000016989	RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs.	tRNA phosphotransferase 1.	0.621
RTCB	XPOT	ENSMMUP00000008846	ENSMMUP00000010066	RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs.	Exportin-T; tRNA nucleus export receptor which facilitates tRNA translocation across the nuclear pore complex. Belongs to the exportin family.	0.466