Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PCIF1Phosphorylated CTD-interacting factor 1. (704 aa)    
Predicted Functional Partners:
PDX1
Pancreatic and duodenal homeobox 1.
    
 
 0.668
METTL4
Methyltransferase like 4; Belongs to the MT-A70-like family.
      
 0.562
TMPRSS4
Transmembrane serine protease 4; Belongs to the peptidase S1 family.
   
  
 0.503
ETS1
ETS proto-oncogene 1, transcription factor.
      
 0.484
CUL3
Cullin-3; Belongs to the cullin family.
      
 0.466
POLR2A
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.465
ERICH1
Glutamate rich 1.
      
 0.411
Your Current Organism:
Macaca mulatta
NCBI taxonomy Id: 9544
Other names: M. mulatta, Rhesus monkey, rhesus macaque, rhesus macaques, rhesus monkeys
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