GAN protein (Macaca mulatta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

GAN

Gigaxonin. (597 aa)

Predicted Functional Partners:

CUL3

0.844

INA

0.806

NEFM

0.778

MAP1B

0.717

COMMD5

0.707

COMMD9

0.707

TBCB

0.705

ENSMMUP00000052038

0.705

CBX1

0.668

SDC1

0.659

Your Current Organism:

Macaca mulatta

NCBI taxonomy Id: 9544
Other names: M. mulatta, Rhesus monkey, rhesus macaque, rhesus macaques, rhesus monkeys

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CBX1	GAN	ENSMMUP00000063005	ENSMMUP00000019699	Uncharacterized protein.	Gigaxonin.	0.668
COMMD5	COMMD9	ENSMMUP00000015158	ENSMMUP00000055030	COMM domain containing 5.	Uncharacterized protein.	0.959
COMMD5	CUL3	ENSMMUP00000015158	ENSMMUP00000037501	COMM domain containing 5.	Cullin-3; Belongs to the cullin family.	0.569
COMMD5	GAN	ENSMMUP00000015158	ENSMMUP00000019699	COMM domain containing 5.	Gigaxonin.	0.707
COMMD9	COMMD5	ENSMMUP00000055030	ENSMMUP00000015158	Uncharacterized protein.	COMM domain containing 5.	0.959
COMMD9	CUL3	ENSMMUP00000055030	ENSMMUP00000037501	Uncharacterized protein.	Cullin-3; Belongs to the cullin family.	0.557
COMMD9	GAN	ENSMMUP00000055030	ENSMMUP00000019699	Uncharacterized protein.	Gigaxonin.	0.707
CUL3	COMMD5	ENSMMUP00000037501	ENSMMUP00000015158	Cullin-3; Belongs to the cullin family.	COMM domain containing 5.	0.569
CUL3	COMMD9	ENSMMUP00000037501	ENSMMUP00000055030	Cullin-3; Belongs to the cullin family.	Uncharacterized protein.	0.557
CUL3	GAN	ENSMMUP00000037501	ENSMMUP00000019699	Cullin-3; Belongs to the cullin family.	Gigaxonin.	0.844
ENSMMUP00000052038	GAN	ENSMMUP00000052038	ENSMMUP00000019699	Ubiquitin-like domain-containing protein.	Gigaxonin.	0.705
GAN	CBX1	ENSMMUP00000019699	ENSMMUP00000063005	Gigaxonin.	Uncharacterized protein.	0.668
GAN	COMMD5	ENSMMUP00000019699	ENSMMUP00000015158	Gigaxonin.	COMM domain containing 5.	0.707
GAN	COMMD9	ENSMMUP00000019699	ENSMMUP00000055030	Gigaxonin.	Uncharacterized protein.	0.707
GAN	CUL3	ENSMMUP00000019699	ENSMMUP00000037501	Gigaxonin.	Cullin-3; Belongs to the cullin family.	0.844
GAN	ENSMMUP00000052038	ENSMMUP00000019699	ENSMMUP00000052038	Gigaxonin.	Ubiquitin-like domain-containing protein.	0.705
GAN	INA	ENSMMUP00000019699	ENSMMUP00000011635	Gigaxonin.	Alpha-internexin; Belongs to the intermediate filament family.	0.806
GAN	MAP1B	ENSMMUP00000019699	ENSMMUP00000023538	Gigaxonin.	Uncharacterized protein.	0.717
GAN	NEFM	ENSMMUP00000019699	ENSMMUP00000000856	Gigaxonin.	Neurofilament medium; Belongs to the intermediate filament family.	0.778
GAN	SDC1	ENSMMUP00000019699	ENSMMUP00000063420	Gigaxonin.	Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.	0.659