Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RBBP6RB binding protein 6, ubiquitin ligase. (1791 aa)    
Predicted Functional Partners:
PCF11
PCF11 cleavage and polyadenylation factor subunit.
   
 0.986
CPSF3
Cleavage and polyadenylation specificity factor subunit 3.
    
 0.958
CPSF2
Cleavage and polyadenylation specificity factor subunit 2.
    
 0.958
CSTF3
Cleavage stimulation factor subunit 3 isoform 1.
    
 0.957
SYMPK
Symplekin.
    
 0.930
PAPOLG
Poly(A) polymerase gamma.
   
 0.926
PAPOLA
Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.
   
 0.896
CPSF6
Cleavage and polyadenylation specific factor 6.
    
 0.885
CPSF4L
Cleavage and polyadenylation specific factor 4 like.
   
 0.877
CPSF4
Cleavage and polyadenylation specific factor 4.
   
 0.877
Your Current Organism:
Macaca mulatta
NCBI taxonomy Id: 9544
Other names: M. mulatta, Rhesus monkey, rhesus macaque, rhesus macaques, rhesus monkeys
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