DDX20 protein (Macaca mulatta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

DDX20

DEAD-box helicase 20. (878 aa)

Predicted Functional Partners:

GEMIN5

0.995

GEMIN2

0.995

GEMIN4

0.995

GEMIN8

0.990

SMN1

0.984

GEMIN7

0.984

GEMIN7-2

0.984

STRAP

0.978

GEMIN6

0.971

LOC100424620

0.853

Your Current Organism:

Macaca mulatta

NCBI taxonomy Id: 9544
Other names: M. mulatta, Rhesus monkey, rhesus macaque, rhesus macaques, rhesus monkeys

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDX20	GEMIN2	ENSMMUP00000065490	ENSMMUP00000032961	DEAD-box helicase 20.	Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family.	0.995
DDX20	GEMIN4	ENSMMUP00000065490	ENSMMUP00000035467	DEAD-box helicase 20.	Gem nuclear organelle associated protein 4.	0.995
DDX20	GEMIN5	ENSMMUP00000065490	ENSMMUP00000027951	DEAD-box helicase 20.	Gem nuclear organelle associated protein 5.	0.995
DDX20	GEMIN6	ENSMMUP00000065490	ENSMMUP00000012026	DEAD-box helicase 20.	Gem nuclear organelle associated protein 6.	0.971
DDX20	GEMIN7	ENSMMUP00000065490	ENSMMUP00000073885	DEAD-box helicase 20.	Gem-associated protein 7.	0.984
DDX20	GEMIN7-2	ENSMMUP00000065490	ENSMMUP00000079641	DEAD-box helicase 20.	Uncharacterized protein.	0.984
DDX20	GEMIN8	ENSMMUP00000065490	ENSMMUP00000017873	DEAD-box helicase 20.	Gem-associated protein 8.	0.990
DDX20	LOC100424620	ENSMMUP00000065490	ENSMMUP00000050154	DEAD-box helicase 20.	SMN domain-containing protein.	0.853
DDX20	SMN1	ENSMMUP00000065490	ENSMMUP00000060628	DEAD-box helicase 20.	Tudor domain-containing protein.	0.984
DDX20	STRAP	ENSMMUP00000065490	ENSMMUP00000048138	DEAD-box helicase 20.	Serine-threonine kinase receptor-associated protein.	0.978
GEMIN2	DDX20	ENSMMUP00000032961	ENSMMUP00000065490	Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family.	DEAD-box helicase 20.	0.995
GEMIN2	GEMIN4	ENSMMUP00000032961	ENSMMUP00000035467	Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family.	Gem nuclear organelle associated protein 4.	0.988
GEMIN2	GEMIN5	ENSMMUP00000032961	ENSMMUP00000027951	Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family.	Gem nuclear organelle associated protein 5.	0.930
GEMIN2	GEMIN6	ENSMMUP00000032961	ENSMMUP00000012026	Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family.	Gem nuclear organelle associated protein 6.	0.826
GEMIN2	GEMIN7	ENSMMUP00000032961	ENSMMUP00000073885	Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family.	Gem-associated protein 7.	0.905
GEMIN2	GEMIN7-2	ENSMMUP00000032961	ENSMMUP00000079641	Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family.	Uncharacterized protein.	0.905
GEMIN2	GEMIN8	ENSMMUP00000032961	ENSMMUP00000017873	Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family.	Gem-associated protein 8.	0.977
GEMIN2	LOC100424620	ENSMMUP00000032961	ENSMMUP00000050154	Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family.	SMN domain-containing protein.	0.831
GEMIN2	SMN1	ENSMMUP00000032961	ENSMMUP00000060628	Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family.	Tudor domain-containing protein.	0.882
GEMIN2	STRAP	ENSMMUP00000032961	ENSMMUP00000048138	Gem-associated protein 2; The SMN complex plays a catalyst role in the assembly of small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Thereby, plays an important role in the splicing of cellular pre-mRNAs; Belongs to the gemin-2 family.	Serine-threonine kinase receptor-associated protein.	0.871