RBM42 protein (Macaca nemestrina) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RBM42

RNA binding motif protein 42. (480 aa)

Predicted Functional Partners:

SART1

0.956

HAUS3

0.948

HAUS6

0.946

HAUS8

0.944

HAUS4

0.929

HAUS7

0.923

PRPF3

0.916

USP39

0.915

PRPF31

0.914

SNRPA

0.909

Your Current Organism:

Macaca nemestrina

NCBI taxonomy Id: 9545
Other names: M. nemestrina, pig-tailed macaque, pigtail macaque, pigtail monkey

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
HAUS3	HAUS4	ENSMNEP00000014005	ENSMNEP00000033584	HAUS augmin like complex subunit 3.	Uncharacterized protein.	0.985
HAUS3	HAUS6	ENSMNEP00000014005	ENSMNEP00000021750	HAUS augmin like complex subunit 3.	HAUS augmin like complex subunit 6.	0.996
HAUS3	HAUS7	ENSMNEP00000014005	ENSMNEP00000025923	HAUS augmin like complex subunit 3.	HAUS augmin like complex subunit 7.	0.984
HAUS3	HAUS8	ENSMNEP00000014005	ENSMNEP00000010410	HAUS augmin like complex subunit 3.	HAUS augmin like complex subunit 8.	0.990
HAUS3	RBM42	ENSMNEP00000014005	ENSMNEP00000011574	HAUS augmin like complex subunit 3.	RNA binding motif protein 42.	0.948
HAUS4	HAUS3	ENSMNEP00000033584	ENSMNEP00000014005	Uncharacterized protein.	HAUS augmin like complex subunit 3.	0.985
HAUS4	HAUS6	ENSMNEP00000033584	ENSMNEP00000021750	Uncharacterized protein.	HAUS augmin like complex subunit 6.	0.989
HAUS4	HAUS7	ENSMNEP00000033584	ENSMNEP00000025923	Uncharacterized protein.	HAUS augmin like complex subunit 7.	0.980
HAUS4	HAUS8	ENSMNEP00000033584	ENSMNEP00000010410	Uncharacterized protein.	HAUS augmin like complex subunit 8.	0.989
HAUS4	RBM42	ENSMNEP00000033584	ENSMNEP00000011574	Uncharacterized protein.	RNA binding motif protein 42.	0.929
HAUS6	HAUS3	ENSMNEP00000021750	ENSMNEP00000014005	HAUS augmin like complex subunit 6.	HAUS augmin like complex subunit 3.	0.996
HAUS6	HAUS4	ENSMNEP00000021750	ENSMNEP00000033584	HAUS augmin like complex subunit 6.	Uncharacterized protein.	0.989
HAUS6	HAUS7	ENSMNEP00000021750	ENSMNEP00000025923	HAUS augmin like complex subunit 6.	HAUS augmin like complex subunit 7.	0.986
HAUS6	HAUS8	ENSMNEP00000021750	ENSMNEP00000010410	HAUS augmin like complex subunit 6.	HAUS augmin like complex subunit 8.	0.995
HAUS6	RBM42	ENSMNEP00000021750	ENSMNEP00000011574	HAUS augmin like complex subunit 6.	RNA binding motif protein 42.	0.946
HAUS7	HAUS3	ENSMNEP00000025923	ENSMNEP00000014005	HAUS augmin like complex subunit 7.	HAUS augmin like complex subunit 3.	0.984
HAUS7	HAUS4	ENSMNEP00000025923	ENSMNEP00000033584	HAUS augmin like complex subunit 7.	Uncharacterized protein.	0.980
HAUS7	HAUS6	ENSMNEP00000025923	ENSMNEP00000021750	HAUS augmin like complex subunit 7.	HAUS augmin like complex subunit 6.	0.986
HAUS7	HAUS8	ENSMNEP00000025923	ENSMNEP00000010410	HAUS augmin like complex subunit 7.	HAUS augmin like complex subunit 8.	0.984
HAUS7	RBM42	ENSMNEP00000025923	ENSMNEP00000011574	HAUS augmin like complex subunit 7.	RNA binding motif protein 42.	0.923