Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
AGO2 | DCP2 | ENSMNEP00000004370 | ENSMNEP00000023819 | Protein argonaute-2; Required for RNA-mediated gene silencing (RNAi) by the RNA- induced silencing complex (RISC). The 'minimal RISC' appears to include AGO2 bound to a short guide RNA such as a microRNA (miRNA) or short interfering RNA (siRNA). These guide RNAs direct RISC to complementary mRNAs that are targets for RISC-mediated gene silencing. The precise mechanism of gene silencing depends on the degree of complementarity between the miRNA or siRNA and its target. Binding of RISC to a perfectly complementary mRNA generally results in silencing due to endonucleolytic cleavage of the [...] | Decapping mRNA 2. | 0.590 |
AGO2 | DROSHA | ENSMNEP00000004370 | ENSMNEP00000029059 | Protein argonaute-2; Required for RNA-mediated gene silencing (RNAi) by the RNA- induced silencing complex (RISC). The 'minimal RISC' appears to include AGO2 bound to a short guide RNA such as a microRNA (miRNA) or short interfering RNA (siRNA). These guide RNAs direct RISC to complementary mRNAs that are targets for RISC-mediated gene silencing. The precise mechanism of gene silencing depends on the degree of complementarity between the miRNA or siRNA and its target. Binding of RISC to a perfectly complementary mRNA generally results in silencing due to endonucleolytic cleavage of the [...] | Drosha ribonuclease III. | 0.942 |
AGO2 | PNLDC1 | ENSMNEP00000004370 | ENSMNEP00000020978 | Protein argonaute-2; Required for RNA-mediated gene silencing (RNAi) by the RNA- induced silencing complex (RISC). The 'minimal RISC' appears to include AGO2 bound to a short guide RNA such as a microRNA (miRNA) or short interfering RNA (siRNA). These guide RNAs direct RISC to complementary mRNAs that are targets for RISC-mediated gene silencing. The precise mechanism of gene silencing depends on the degree of complementarity between the miRNA or siRNA and its target. Binding of RISC to a perfectly complementary mRNA generally results in silencing due to endonucleolytic cleavage of the [...] | PARN like, ribonuclease domain containing 1. | 0.574 |
ARMC10 | OGDHL | ENSMNEP00000016765 | ENSMNEP00000032865 | Armadillo repeat containing 10. | Oxoglutarate dehydrogenase like. | 0.708 |
ARMC10 | PNLDC1 | ENSMNEP00000016765 | ENSMNEP00000020978 | Armadillo repeat containing 10. | PARN like, ribonuclease domain containing 1. | 0.637 |
ARMC10 | TDRKH | ENSMNEP00000016765 | ENSMNEP00000004714 | Armadillo repeat containing 10. | Tudor and KH domain containing. | 0.598 |
DCP2 | AGO2 | ENSMNEP00000023819 | ENSMNEP00000004370 | Decapping mRNA 2. | Protein argonaute-2; Required for RNA-mediated gene silencing (RNAi) by the RNA- induced silencing complex (RISC). The 'minimal RISC' appears to include AGO2 bound to a short guide RNA such as a microRNA (miRNA) or short interfering RNA (siRNA). These guide RNAs direct RISC to complementary mRNAs that are targets for RISC-mediated gene silencing. The precise mechanism of gene silencing depends on the degree of complementarity between the miRNA or siRNA and its target. Binding of RISC to a perfectly complementary mRNA generally results in silencing due to endonucleolytic cleavage of the [...] | 0.590 |
DCP2 | EXOSC4 | ENSMNEP00000023819 | ENSMNEP00000020236 | Decapping mRNA 2. | Exosome component 4. | 0.863 |
DCP2 | EXOSC5 | ENSMNEP00000023819 | ENSMNEP00000043438 | Decapping mRNA 2. | Exosome component 5. | 0.897 |
DCP2 | PARN | ENSMNEP00000023819 | ENSMNEP00000045160 | Decapping mRNA 2. | Poly(A)-specific ribonuclease. | 0.914 |
DCP2 | PNLDC1 | ENSMNEP00000023819 | ENSMNEP00000020978 | Decapping mRNA 2. | PARN like, ribonuclease domain containing 1. | 0.692 |
DROSHA | AGO2 | ENSMNEP00000029059 | ENSMNEP00000004370 | Drosha ribonuclease III. | Protein argonaute-2; Required for RNA-mediated gene silencing (RNAi) by the RNA- induced silencing complex (RISC). The 'minimal RISC' appears to include AGO2 bound to a short guide RNA such as a microRNA (miRNA) or short interfering RNA (siRNA). These guide RNAs direct RISC to complementary mRNAs that are targets for RISC-mediated gene silencing. The precise mechanism of gene silencing depends on the degree of complementarity between the miRNA or siRNA and its target. Binding of RISC to a perfectly complementary mRNA generally results in silencing due to endonucleolytic cleavage of the [...] | 0.942 |
DROSHA | PNLDC1 | ENSMNEP00000029059 | ENSMNEP00000020978 | Drosha ribonuclease III. | PARN like, ribonuclease domain containing 1. | 0.565 |
EXOSC4 | DCP2 | ENSMNEP00000020236 | ENSMNEP00000023819 | Exosome component 4. | Decapping mRNA 2. | 0.863 |
EXOSC4 | EXOSC5 | ENSMNEP00000020236 | ENSMNEP00000043438 | Exosome component 4. | Exosome component 5. | 0.998 |
EXOSC4 | PARN | ENSMNEP00000020236 | ENSMNEP00000045160 | Exosome component 4. | Poly(A)-specific ribonuclease. | 0.656 |
EXOSC4 | PNLDC1 | ENSMNEP00000020236 | ENSMNEP00000020978 | Exosome component 4. | PARN like, ribonuclease domain containing 1. | 0.547 |
EXOSC5 | DCP2 | ENSMNEP00000043438 | ENSMNEP00000023819 | Exosome component 5. | Decapping mRNA 2. | 0.897 |
EXOSC5 | EXOSC4 | ENSMNEP00000043438 | ENSMNEP00000020236 | Exosome component 5. | Exosome component 4. | 0.998 |
EXOSC5 | PARN | ENSMNEP00000043438 | ENSMNEP00000045160 | Exosome component 5. | Poly(A)-specific ribonuclease. | 0.746 |
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