STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL28A1Collagen type XXVIII alpha 1 chain. (1155 aa)    
Predicted Functional Partners:
P3H2
Prolyl 3-hydroxylase 2.
   
 
 0.510
P3H3
Prolyl 3-hydroxylase 3.
   
 
 0.510
P4HB
Prolyl 4-hydroxylase subunit beta; Belongs to the protein disulfide isomerase family.
   
 0.509
PLOD2
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 2.
     
 0.490
PLOD3
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 3.
     
 0.482
COL1A2
Collagen type I alpha 2 chain.
  
 
0.462
COL2A1
Collagen type II alpha 1 chain.
  
 
0.462
COL1A1
Collagen type I alpha 1 chain.
  
 
0.460
PPP4R4
Protein phosphatase 4 regulatory subunit 4.
    
 0.445
P3H1
Prolyl 3-hydroxylase 1.
   
 
 0.436
Your Current Organism:
Macaca nemestrina
NCBI taxonomy Id: 9545
Other names: M. nemestrina, pig-tailed macaque, pigtail macaque, pigtail monkey
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.