STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
USP13Ubiquitin carboxyl-terminal hydrolase; Deubiquitinating enzyme that removes conjugated ubiquitin from specific proteins to regulate different cellular processes. Belongs to the peptidase C19 family. (863 aa)    
Predicted Functional Partners:
BECN1
Beclin 1.
     
 0.856
SIAH2
E3 ubiquitin-protein ligase; E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates.
    
 0.837
UFD1
Ubiquitin recognition factor in ER associated degradation 1.
    
 0.770
ENSMNEP00000002753
Ubiquitin-like domain-containing protein.
    
 0.766
ENSMNEP00000005796
Ribosomal_S27 domain-containing protein.
    
 0.766
ENSMNEP00000005892
Ubiquitin-like domain-containing protein.
    
 0.766
RPS27A
Ubiquitin-like domain-containing protein.
    
 0.766
ENSMNEP00000035304
Ubiquitin-like domain-containing protein.
    
 0.766
LOC105475719
Ubiquitin-like domain-containing protein.
    
 0.762
ENSMNEP00000004083
Ubiquitin-like domain-containing protein.
    
 0.762
Your Current Organism:
Macaca nemestrina
NCBI taxonomy Id: 9545
Other names: M. nemestrina, pig-tailed macaque, pigtail macaque, pigtail monkey
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