Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ALYREF | EIF4A3 | ENSMNEP00000041705 | ENSMNEP00000031891 | Aly/REF export factor. | Uncharacterized protein; Belongs to the DEAD box helicase family. | 0.979 |
ALYREF | ENSMNEP00000029986 | ENSMNEP00000041705 | ENSMNEP00000029986 | Aly/REF export factor. | Uncharacterized protein; Belongs to the DEAD box helicase family. | 0.979 |
ALYREF | LOC105472065 | ENSMNEP00000041705 | ENSMNEP00000011725 | Aly/REF export factor. | Uncharacterized protein. | 0.757 |
ALYREF | MAGOH | ENSMNEP00000041705 | ENSMNEP00000015780 | Aly/REF export factor. | Mago homolog, exon junction complex subunit. | 0.879 |
ALYREF | MAGOHB | ENSMNEP00000041705 | ENSMNEP00000009573 | Aly/REF export factor. | Mago homolog B, exon junction complex subunit. | 0.879 |
ALYREF | NCBP2 | ENSMNEP00000041705 | ENSMNEP00000034994 | Aly/REF export factor. | Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] | 0.986 |
ALYREF | RBM8A | ENSMNEP00000041705 | ENSMNEP00000034457 | Aly/REF export factor. | RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. | 0.979 |
ALYREF | UPF1 | ENSMNEP00000041705 | ENSMNEP00000000047 | Aly/REF export factor. | UPF1 RNA helicase and ATPase. | 0.954 |
ALYREF | UPF3A | ENSMNEP00000041705 | ENSMNEP00000025893 | Aly/REF export factor. | UPF3A regulator of nonsense mediated mRNA decay. | 0.973 |
EIF4A3 | ALYREF | ENSMNEP00000031891 | ENSMNEP00000041705 | Uncharacterized protein; Belongs to the DEAD box helicase family. | Aly/REF export factor. | 0.979 |
EIF4A3 | LOC105472065 | ENSMNEP00000031891 | ENSMNEP00000011725 | Uncharacterized protein; Belongs to the DEAD box helicase family. | Uncharacterized protein. | 0.966 |
EIF4A3 | MAGOH | ENSMNEP00000031891 | ENSMNEP00000015780 | Uncharacterized protein; Belongs to the DEAD box helicase family. | Mago homolog, exon junction complex subunit. | 0.873 |
EIF4A3 | MAGOHB | ENSMNEP00000031891 | ENSMNEP00000009573 | Uncharacterized protein; Belongs to the DEAD box helicase family. | Mago homolog B, exon junction complex subunit. | 0.873 |
EIF4A3 | NCBP2 | ENSMNEP00000031891 | ENSMNEP00000034994 | Uncharacterized protein; Belongs to the DEAD box helicase family. | Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...] | 0.807 |
EIF4A3 | PYM1 | ENSMNEP00000031891 | ENSMNEP00000021924 | Uncharacterized protein; Belongs to the DEAD box helicase family. | PYM homolog 1, exon junction complex associated factor. | 0.451 |
EIF4A3 | RBM8A | ENSMNEP00000031891 | ENSMNEP00000034457 | Uncharacterized protein; Belongs to the DEAD box helicase family. | RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs. | 0.991 |
EIF4A3 | UPF1 | ENSMNEP00000031891 | ENSMNEP00000000047 | Uncharacterized protein; Belongs to the DEAD box helicase family. | UPF1 RNA helicase and ATPase. | 0.820 |
EIF4A3 | UPF3A | ENSMNEP00000031891 | ENSMNEP00000025893 | Uncharacterized protein; Belongs to the DEAD box helicase family. | UPF3A regulator of nonsense mediated mRNA decay. | 0.948 |
ENSMNEP00000029986 | ALYREF | ENSMNEP00000029986 | ENSMNEP00000041705 | Uncharacterized protein; Belongs to the DEAD box helicase family. | Aly/REF export factor. | 0.979 |
ENSMNEP00000029986 | LOC105472065 | ENSMNEP00000029986 | ENSMNEP00000011725 | Uncharacterized protein; Belongs to the DEAD box helicase family. | Uncharacterized protein. | 0.966 |
page 1 of 6