DM40_1028 protein (Burkholderia cenocepacia)

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[Homology]

Score

DM40_1028

Hypothetical protein. (200 aa)

Predicted Functional Partners:

rplB

0.850

rpsE

0.850

rplS

0.850

rpsJ

0.839

rpmA

0.839

rpsB

0.839

rplQ

0.838

rpmF

0.836

rplO

0.834

rpmJ

0.833

Your Current Organism:

Burkholderia cenocepacia

NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227

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structured XML interaction data, according to the 'PSI-MI' data standard

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DM40_1028	rplB	DM40_1028	DM40_1070	Hypothetical protein.	Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	0.850
DM40_1028	rplO	DM40_1028	DM40_1086	Hypothetical protein.	Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.	0.834
DM40_1028	rplQ	DM40_1028	DM40_1094	Hypothetical protein.	L17: ribosomal protein L17.	0.838
DM40_1028	rplS	DM40_1028	DM40_1733	Hypothetical protein.	Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.850
DM40_1028	rpmA	DM40_1028	DM40_1289	Hypothetical protein.	L27: ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.839
DM40_1028	rpmF	DM40_1028	DM40_1781	Hypothetical protein.	rpmF_bact: ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.836
DM40_1028	rpmJ	DM40_1028	DM40_1089	Hypothetical protein.	rpmJ_bact: ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.	0.833
DM40_1028	rpsB	DM40_1028	DM40_2656	Hypothetical protein.	rpsB_bact: ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.839
DM40_1028	rpsE	DM40_1028	DM40_1084	Hypothetical protein.	Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.	0.850
DM40_1028	rpsJ	DM40_1028	DM40_1066	Hypothetical protein.	Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.839
rplB	DM40_1028	DM40_1070	DM40_1028	Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	Hypothetical protein.	0.850
rplB	rplO	DM40_1070	DM40_1086	Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.	0.998
rplB	rplQ	DM40_1070	DM40_1094	Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	L17: ribosomal protein L17.	0.997
rplB	rplS	DM40_1070	DM40_1733	Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.994
rplB	rpmA	DM40_1070	DM40_1289	Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	L27: ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.988
rplB	rpmF	DM40_1070	DM40_1781	Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	rpmF_bact: ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.988
rplB	rpmJ	DM40_1070	DM40_1089	Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	rpmJ_bact: ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family.	0.991
rplB	rpsB	DM40_1070	DM40_2656	Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	rpsB_bact: ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.	0.994
rplB	rpsE	DM40_1070	DM40_1084	Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.	0.998
rplB	rpsJ	DM40_1070	DM40_1066	Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.	Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.998

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