STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kstR2_1Bacterial regulatory s, tetR family protein. (201 aa)    
Predicted Functional Partners:
DM40_1038
2Fe-2S iron-sulfur cluster binding domain protein.
 
  
 0.821
paaJ
PA_CoA_Oxy4: phenylacetate-CoA oxygenase, PaaJ subunit.
 
     0.797
DM40_1040
Phenylacetic acid catabolic family protein.
 
     0.793
DM40_1037
Hypothetical protein.
 
     0.780
DM40_1042
Phenylacetic acid catabolic family protein.
 
     0.729
paaB-2
Phenylacetic acid degradation B.
 
     0.725
DM40_1483
FAD binding domain protein.
  
     0.655
DM40_4314
Metallo-beta-lactamase superfamily protein.
  
     0.637
paaD
paaD: phenylacetic acid degradation protein PaaD.
 
     0.560
DM40_1035
Acetyltransferase family protein.
 
     0.533
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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