STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_10382Fe-2S iron-sulfur cluster binding domain protein. (362 aa)    
Predicted Functional Partners:
paaJ
PA_CoA_Oxy4: phenylacetate-CoA oxygenase, PaaJ subunit.
 
 
 0.998
DM40_1040
Phenylacetic acid catabolic family protein.
 
 0.997
paaB-2
Phenylacetic acid degradation B.
 
 
 0.997
DM40_1042
Phenylacetic acid catabolic family protein.
 
 0.992
paaD
paaD: phenylacetic acid degradation protein PaaD.
 
 
  0.983
paaF-2
phenylacetate-CoA ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).
 
 
 0.971
DM40_4518
FAD binding domain protein; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
  
 0.956
paaB
paaB1: phenylacetate degradation putative enoyl-CoA hydratase PaaB; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 
 0.952
DM40_3053
soxA: sarcosine oxidase, alpha subunit; Belongs to the GcvT family.
  
 0.914
DM40_4874
Cytochrome P450 family protein.
  
 0.911
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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