STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_1195BON domain protein. (321 aa)    
Predicted Functional Partners:
tagF
Hypothetical protein.
 
  
 0.949
DM40_1197
Intracellular multiplication and macrophage-killing family protein.
 
  
 0.940
DM40_1198
D-alanyl-D-alanine carboxypeptidase family protein.
 
     0.843
tolB
Tol-Pal system beta propeller repeat protein TolB; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 0.759
DM40_1183
IV_VI_DotU: type IV/VI secretion system, DotU family domain protein.
 
  
  0.687
tssJ
Type VI secretion lipofamily protein.
  
   
 0.683
DM40_4685
ompA family protein.
  
 0.669
hcp-1
VI_effect_Hcp1: type VI secretion system effector, Hcp1 family protein.
  
    0.638
tssE
25-like lysozyme family protein.
  
     0.559
DM40_3013
F5/8 type C domain protein.
 
 0.548
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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