STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_1197Intracellular multiplication and macrophage-killing family protein. (1313 aa)    
Predicted Functional Partners:
tagF
Hypothetical protein.
 
  
 0.965
DM40_1195
BON domain protein.
 
  
 0.940
hcp-1
VI_effect_Hcp1: type VI secretion system effector, Hcp1 family protein.
 
 
 0.920
tssC
Hypothetical protein.
 
 
 0.914
DM40_4769
Hypothetical protein.
 
 
 0.903
tssK
Hypothetical protein.
 
 
 0.891
EvpA
Hypothetical protein.
 
 
 0.890
DM40_4771
Hypothetical protein.
 
 
 0.889
clpV
VI_ClpV1: type VI secretion ATPase, ClpV1 family; Belongs to the ClpA/ClpB family.
 
 
 0.881
DM40_1192
Hypothetical protein.
 
 
 0.876
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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