STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
paaBpaaB1: phenylacetate degradation putative enoyl-CoA hydratase PaaB; Belongs to the enoyl-CoA hydratase/isomerase family. (263 aa)    
Predicted Functional Partners:
paaJ
PA_CoA_Oxy4: phenylacetate-CoA oxygenase, PaaJ subunit.
 
 
 0.978
DM40_1042
Phenylacetic acid catabolic family protein.
 
 
 0.978
DM40_1040
Phenylacetic acid catabolic family protein.
 
 
 0.975
paaB-2
Phenylacetic acid degradation B.
 
 
 0.970
DM40_1247
enoyl-CoA hydratase/isomerase family protein; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 
0.963
DM40_1038
2Fe-2S iron-sulfur cluster binding domain protein.
 
 
 0.950
paaD
paaD: phenylacetic acid degradation protein PaaD.
 
 
 0.949
DM40_5297
3-hydroxyacyl-CoA dehydrogenase, NAD binding domain protein.
 0.913
pcaF
pcaF: 3-oxoadipyl-CoA thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
 
 0.874
DM40_4542
3-hydroxyacyl-CoA dehydrogenase, NAD binding domain protein.
 0.867
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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