STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_1284Type II/IV secretion system family protein. (425 aa)    
Predicted Functional Partners:
DM40_1283
Type II secretion system (T2SS), F family protein.
 
 
 0.989
DM40_1282
Type IV leader peptidase family protein; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
 
 0.962
gspF
gspF: type II secretion system protein F.
 
 
 0.952
gspL
typeII_sec_gspL: type II secretion system protein L.
  
 
 0.946
gspG
typeII_sec_gspG: type II secretion system protein G.
 
 0.912
pilQ
IV_pilus_PilQ: type IV pilus secretin PilQ family protein.
 
 
 
 0.896
DM40_4023
Type II secretion system (T2SS), F family protein.
 
 
 0.841
DM40_2751
comEC_Rec2: DNA internalization-related competence protein ComEC/Rec2.
 
  
 0.736
gspI
gspI: type II secretion system protein I.
  
 0.700
gspH
typeII_sec_gspH: type II secretion system protein H.
  
 0.694
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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