STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_1329Aldose 1-epimerase family protein. (353 aa)    
Predicted Functional Partners:
glk
Glk: glucokinase; Belongs to the bacterial glucokinase family.
    
 0.914
DM40_3375
Beta-galactosidase.
  
 
 0.909
DM40_5275
Aldose 1-epimerase family protein; Converts alpha-aldose to the beta-anomer.
     
  0.900
DM40_5777
Aldose 1-epimerase family protein; Converts alpha-aldose to the beta-anomer.
     
  0.900
DM40_1325
Periplasmic binding s and sugar binding domain of LacI family protein.
 
   
 0.691
DM40_1328
Short chain dehydrogenase family protein.
 
     0.649
pyrF
pyrF_sub2: orotidine 5'-phosphate decarboxylase; Belongs to the OMP decarboxylase family. Type 2 subfamily.
       0.646
DM40_1323
Thiamine monophosphate synthase/TENI family protein.
 
   
 0.543
araH
Branched-chain amino acid transport system / permease component family protein; Belongs to the binding-protein-dependent transport system permease family.
       0.537
DM40_1322
2-keto-3-deoxy-galactonokinase family protein.
 
     0.511
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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