STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_1360gntP: transporter, gluconate:H+ symporter family protein. (453 aa)    
Predicted Functional Partners:
DM40_1361
Therm_gnt_kin: carbohydrate kinase, thermoresistant glucokinase family protein.
 
  
 0.919
DM40_2527
Glycerate kinase family protein; Belongs to the glycerate kinase type-1 family.
 
  
 0.667
edd
Phosphogluconate dehydratase; Catalyzes the dehydration of 6-phospho-D-gluconate to 2- dehydro-3-deoxy-6-phospho-D-gluconate; Belongs to the IlvD/Edd family.
  
  
 0.582
eda
Eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase family protein.
     
 0.554
DM40_4783
Hypothetical protein; FGGY family of carbohydrate kinase, N-terminal domain protein; Belongs to the FGGY kinase family.
 
  
 0.491
DM40_236
Hypothetical protein; FGGY family of carbohydrate kinase, N-terminal domain protein.
 
  
 0.456
xylB-2
xylB: xylulokinase.
 
  
 0.412
xylB
xylB: xylulokinase.
 
  
 0.411
nagE
PTS-II-BC-nag: PTS system, N-acetylglucosamine-specific IIBC component.
      
 0.405
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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