Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| DM40_2491 | erpA | DM40_2491 | DM40_1378 | Aminomethyltransferase folate-binding domain protein; Belongs to the GcvT family. | Iron-sulfur cluster assembly accessory family protein; Required for insertion of 4Fe-4S clusters. | 0.691 |
| DM40_2491 | grxD | DM40_2491 | DM40_1214 | Aminomethyltransferase folate-binding domain protein; Belongs to the GcvT family. | Monothiol glutaredoxin, Grx4 family; Belongs to the glutaredoxin family. Monothiol subfamily. | 0.430 |
| DM40_2491 | iscU | DM40_2491 | DM40_2765 | Aminomethyltransferase folate-binding domain protein; Belongs to the GcvT family. | FeS cluster assembly scaffold IscU; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters. | 0.404 |
| DM40_3576 | dnaJ | DM40_3576 | DM40_1443 | Aminotransferase class-V family protein. | Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...] | 0.495 |
| DM40_3576 | erpA | DM40_3576 | DM40_1378 | Aminotransferase class-V family protein. | Iron-sulfur cluster assembly accessory family protein; Required for insertion of 4Fe-4S clusters. | 0.767 |
| DM40_3576 | hscB | DM40_3576 | DM40_2763 | Aminotransferase class-V family protein. | Fe-S protein assembly co-chaperone HscB; Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA; Belongs to the HscB family. | 0.944 |
| DM40_3576 | iscS | DM40_3576 | DM40_2766 | Aminotransferase class-V family protein. | Cysteine desulfurase IscS; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins. | 0.761 |
| DM40_3576 | iscU | DM40_3576 | DM40_2765 | Aminotransferase class-V family protein. | FeS cluster assembly scaffold IscU; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters. | 0.999 |
| DM40_408 | dnaJ | DM40_408 | DM40_1443 | 4Fe-4S dicluster domain protein. | Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...] | 0.748 |
| DM40_408 | erpA | DM40_408 | DM40_1378 | 4Fe-4S dicluster domain protein. | Iron-sulfur cluster assembly accessory family protein; Required for insertion of 4Fe-4S clusters. | 0.626 |
| DM40_408 | modB | DM40_408 | DM40_3868 | 4Fe-4S dicluster domain protein. | Molybdate ABC transporter, permease protein; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily. | 0.531 |
| dnaJ | DM40_3576 | DM40_1443 | DM40_3576 | Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...] | Aminotransferase class-V family protein. | 0.495 |
| dnaJ | DM40_408 | DM40_1443 | DM40_408 | Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...] | 4Fe-4S dicluster domain protein. | 0.748 |
| dnaJ | erpA | DM40_1443 | DM40_1378 | Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...] | Iron-sulfur cluster assembly accessory family protein; Required for insertion of 4Fe-4S clusters. | 0.549 |
| dnaJ | hscB | DM40_1443 | DM40_2763 | Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...] | Fe-S protein assembly co-chaperone HscB; Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA; Belongs to the HscB family. | 0.407 |
| dnaJ | iscU | DM40_1443 | DM40_2765 | Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...] | FeS cluster assembly scaffold IscU; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters. | 0.556 |
| erpA | DM40_2491 | DM40_1378 | DM40_2491 | Iron-sulfur cluster assembly accessory family protein; Required for insertion of 4Fe-4S clusters. | Aminomethyltransferase folate-binding domain protein; Belongs to the GcvT family. | 0.691 |
| erpA | DM40_3576 | DM40_1378 | DM40_3576 | Iron-sulfur cluster assembly accessory family protein; Required for insertion of 4Fe-4S clusters. | Aminotransferase class-V family protein. | 0.767 |
| erpA | DM40_408 | DM40_1378 | DM40_408 | Iron-sulfur cluster assembly accessory family protein; Required for insertion of 4Fe-4S clusters. | 4Fe-4S dicluster domain protein. | 0.626 |
| erpA | dnaJ | DM40_1378 | DM40_1443 | Iron-sulfur cluster assembly accessory family protein; Required for insertion of 4Fe-4S clusters. | Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...] | 0.549 |
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