STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
nit4Bifunctional nitrilase/nitrile hydratase NIT4. (307 aa)    
Predicted Functional Partners:
DM40_1366
glu/Leu/Phe/Val dehydrogenase, dimerization domain protein; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
 
 0.937
DM40_2809
Glutamine synthetase, catalytic domain protein.
    
 0.924
DM40_4859
Glutamine synthetase, catalytic domain protein.
    
 0.924
DM40_590
Glutamine synthetase, catalytic domain protein.
    
 0.924
glnA
glnA: glutamine synthetase, type I.
    
 0.916
DM40_216
Aldehyde dehydrogenase family protein; Belongs to the aldehyde dehydrogenase family.
    
  0.913
DM40_2368
Aldehyde dehydrogenase family protein; Belongs to the aldehyde dehydrogenase family.
    
 0.913
DM40_4056
Aldehyde dehydrogenase family protein.
    
  0.913
feaB
Phenylacetaldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
    
  0.913
DM40_52
Aldehyde dehydrogenase family protein; Belongs to the aldehyde dehydrogenase family.
    
 0.913
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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