STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_1399glyoxalase/Bleomycin resistance /Dioxygenase superfamily protein. (134 aa)    
Predicted Functional Partners:
DM40_1398
deoR-like helix-turn-helix domain protein.
 
    0.891
pheA
CM_P2: chorismate mutase.
    
  0.769
DM40_2216
glyoxalase/Bleomycin resistance /Dioxygenase superfamily protein.
 
 
 0.574
ethe1
ETHE1, mitochondrial domain protein.
    
  0.572
DM40_1339
glyoxalase/Bleomycin resistance /Dioxygenase superfamily protein.
 
 
 0.571
DM40_4283
Rhodanese-like domain protein.
    
  0.522
DM40_2993
3-demethylubiquinone-9 3-methyltransferase family protein.
  
 
 0.516
DM40_4334
glyoxalase/Bleomycin resistance /Dioxygenase superfamily protein.
  
 
 0.516
DM40_358
Putative D-serine deaminase (D-serine dehydratase) protein.
   
 
  0.501
DM40_3655
Putative amino acid aldolase/racemase.
   
 
  0.501
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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