STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
hmpFlavohemoprotein; Belongs to the globin family. (402 aa)    
Predicted Functional Partners:
DM40_3339
MOSC domain protein.
   
 0.881
thcD
Rhodocoxin reductase.
  
  
 0.718
nirB
nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
  
  
 0.718
DM40_4670
Pyridine nucleotide-disulfide oxidoreductase family protein.
  
  
 0.718
DM40_2445
Rrf2_super: Rrf2 family protein.
 
   
 0.588
DM40_1428
ATP:cob(I)alamin adenosyltransferase, putative; Belongs to the Cob(I)alamin adenosyltransferase family.
       0.568
DM40_3711
2Fe-2S iron-sulfur cluster binding domain protein.
 
  
0.568
yjbI
Bacterial-like globin family protein.
 
   
 0.560
katE
Catalase family protein; Serves to protect cells from the toxic effects of hydrogen peroxide.
 
   
 0.559
DM40_5592
2Fe-2S iron-sulfur cluster binding domain protein.
 
  
0.540
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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