STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_144Mechanosensitive ion channel family protein. (460 aa)    
Predicted Functional Partners:
DM40_145
ubiE/COQ5 methyltransferase family protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
 
     0.793
purN
Phosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.
       0.757
DM40_74
Hypothetical protein.
 
     0.569
ribF
ribF: riboflavin biosynthesis protein RibF; Belongs to the ribF family.
  
    0.565
DM40_1295
marC integral membrane family protein.
 
    0.546
DM40_845
Sodium/hydrogen exchanger family protein.
 
   
 0.528
DM40_1947
Hypothetical protein.
  
     0.504
DM40_1145
marC integral membrane family protein.
 
    0.484
DM40_143
Fatty acid desaturase family protein.
       0.468
DM40_4539
marC integral membrane family protein.
 
    0.448
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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