STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_1517Hypothetical protein; Anti sigma-E RseA, N-terminal domain protein. (261 aa)    
Predicted Functional Partners:
DM40_1516
sigma70-ECF: RNA polymerase sigma factor, sigma-70 family protein.
 
 
 0.948
DM40_1515
Secreted repeat of unknown function family protein.
 
     0.847
DM40_790
sigma70-ECF: RNA polymerase sigma factor, sigma-70 family protein.
 
 
 0.676
DM40_1518
Putative transmembrane anti-sigma factor.
       0.660
DM40_4324
Secreted repeat of unknown function family protein.
 
     0.644
DM40_2472
sigma70-ECF: RNA polymerase sigma factor, sigma-70 family protein.
 
 
 0.618
DM40_1519
Hypothetical protein.
       0.556
DM40_5280
sigma70-ECF: RNA polymerase sigma factor, sigma-70 family protein.
  
 
 0.550
DM40_5288
sigma70-ECF: RNA polymerase sigma factor, sigma-70 family protein.
  
 
 0.550
DM40_1520
Polyketide cyclase / dehydrase and lipid transport family protein.
 
     0.535
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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