STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_1519Hypothetical protein. (196 aa)    
Predicted Functional Partners:
DM40_1015
ABC transporter family protein.
   
 
 0.867
lolD
Liporeleasing system, ATP-binding protein; Part of the ABC transporter complex LolCDE involved in the translocation of lipoproteins, in an ATP-dependent manner.
   
 
 0.867
DM40_1013
ftsX-like permease family protein.
   
 
 0.776
DM40_1014
ftsX-like permease family protein.
   
 
 0.776
DM40_2754
lolCE: liporeleasing system, transmembrane, LolC/E family protein.
   
 
 0.776
DM40_198
N-acetylmuramoyl-L-alanine amidase family protein.
    
   0.774
DM40_4856
N-acetylmuramoyl-L-alanine amidase family protein.
    
   0.774
DM40_1518
Putative transmembrane anti-sigma factor.
       0.685
DM40_1520
Polyketide cyclase / dehydrase and lipid transport family protein.
       0.670
DM40_1516
sigma70-ECF: RNA polymerase sigma factor, sigma-70 family protein.
  
    0.566
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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