STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rfaEDomain I; rfaE_dom_I: bifunctional protein RfaE, domain I. (315 aa)    
Predicted Functional Partners:
gmhA
Phosphoheptose isomerase.
 
  
 0.986
rfaE-3
Bifunctional protein RfaE; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose.
   
 0.985
DM40_994
SIS domain protein.
 
  
 0.978
DM40_320
HAD-SF-IIIA: HAD hydrolase, family IIIA domain protein.
 
  
 0.977
gmhB
gmhB_yaeD: D,D-heptose 1,7-bisphosphate phosphatase family protein.
 
  
 0.977
DM40_5226
HAD-SF-IIIA: HAD hydrolase, family IIIA domain protein.
 
  
 0.977
rfaE-2
Domain I; rfaE_dom_I: bifunctional protein RfaE, domain I.
  
  
 
0.904
rfaD
ADP-glyceromanno-heptose 6-epimerase; Catalyzes the interconversion between ADP-D-glycero-beta-D- manno-heptose and ADP-L-glycero-beta-D-manno-heptose via an epimerization at carbon 6 of the heptose; Belongs to the NAD(P)-dependent epimerase/dehydratase family. HldD subfamily.
 
  
 0.882
DM40_1545
Glycosyltransferase 9 family protein.
 
   
 0.848
DM40_2965
Glycosyltransferase 9 family protein.
 
   
 0.809
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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