STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_1550ABC transporter family protein. (406 aa)    
Predicted Functional Partners:
DM40_1551
ABC-2 type transporter family protein.
 
  
 0.977
DM40_1549
fkbM_fam: methyltransferase, FkbM family domain protein.
 
     0.854
DM40_1546
Glycosyl transferases group 1 family protein.
 
     0.851
DM40_1541
Glycosyl transferases group 1 family protein.
 
     0.810
DM40_1542
3-beta hydroxysteroid dehydrogenase/isomerase family protein.
 
    0.795
atpD
ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
  
 
 
 0.771
DM40_1547
Hypothetical protein.
 
     0.762
atpA
ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.
  
 
   0.756
DM40_1555
Glycosyl transferases group 1 family protein.
 
     0.737
DM40_1545
Glycosyltransferase 9 family protein.
       0.727
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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