STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_15663-deoxy-D-manno-oct-2-ulosonic acid (Kdo) hydroxylase family protein. (294 aa)    
Predicted Functional Partners:
DM40_1567
Glycosyl transferases group 1 family protein; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
       0.689
rfaC
heptsyl_trn_I: lipopolysaccharide heptosyltransferase I.
       0.636
DM40_271
O-Antigen ligase family protein.
  
     0.543
DM40_875
ATP synthase I chain family protein.
  
     0.470
DM40_1790
Hypothetical protein; Anti sigma-E RseA, N-terminal domain protein.
  
     0.467
DM40_2454
Dolichyl-phosphate-mannose-mannosyltransferase family protein.
  
     0.439
DM40_1564
Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III family protein.
       0.419
DM40_1584
Hypothetical protein.
  
     0.418
DM40_2122
Bacterial regulatory helix-turn-helix, lysR family protein; Belongs to the LysR transcriptional regulatory family.
  
     0.418
DM40_265
snoaL-like domain protein.
  
     0.417
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.