STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_1592Bll6730 protein; Belongs to the mandelate racemase/muconate lactonizing enzyme family. (386 aa)    
Predicted Functional Partners:
garD
galactar-dH20: galactarate dehydratase.
 
  
 0.713
DM40_1322
2-keto-3-deoxy-galactonokinase family protein.
 
 
 0.679
DM40_2383
pfkB carbohydrate kinase family protein.
 
  
  0.643
gudD
Glucar-dehydr: glucarate dehydratase.
  
  
  0.622
DM40_1010
D-glucarate dehydratase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
  
  
  0.614
DM40_2347
pfkB carbohydrate kinase family protein.
 
  
  0.579
DM40_219
Mannitol dehydrogenase Rossmann domain protein.
    
 0.572
DM40_4066
Amidohydrolase family protein.
 
  
 0.519
DM40_4967
Amidohydrolase family protein.
 
  
 0.468
DM40_4986
Short chain dehydrogenase family protein.
  
  
 0.463
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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