STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
trxBTRX_reduct: thioredoxin-disulfide reductase. (320 aa)    
Predicted Functional Partners:
trxA-2
Thioredoxin: thioredoxin; Belongs to the thioredoxin family.
 
 0.965
DM40_5858
Pyridine nucleotide-disulfide oxidoreductase family protein.
  
  
 
0.915
selD
Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP.
     
 0.912
trxA
Thioredoxin: thioredoxin.
  
 
 0.825
DM40_731
Thioredoxin family protein.
  
 
 0.747
tsaA
Hypothetical protein; C-terminal domain of 1-Cys peroxiredoxin family protein.
  
 
 0.732
ahpC_1
Redoxin family protein.
  
 
 0.732
ahpC
Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.
  
 
 0.732
DM40_5422
ahpC/TSA family protein.
  
 
 0.714
rpsA
Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.
 
    0.696
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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