STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_1635Fatty acid desaturase family protein. (386 aa)    
Predicted Functional Partners:
DM40_4462
Zinc-binding dehydrogenase family protein.
     
 0.947
DM40_5771
adh_III_F_hyde: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase.
    
 0.946
DM40_4429
Adh_fam_2: zinc-binding alcohol dehydrogenase family protein.
     
 0.756
DM40_3707
Short chain dehydrogenase family protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  
  0.751
DM40_4932
Putative metal-dependent hydrolase family protein.
  
     0.749
DM40_4648
Short chain dehydrogenase family protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  
  0.743
DM40_5608
2Fe-2S iron-sulfur cluster binding domain protein.
 
 
 0.720
DM40_1038
2Fe-2S iron-sulfur cluster binding domain protein.
 
 
 0.715
DM40_4649
Putative metal-dependent hydrolase family protein.
  
     0.715
DM40_3850
Putative metal-dependent hydrolase family protein.
  
     0.709
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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