STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_167UTRA domain protein. (248 aa)    
Predicted Functional Partners:
nagA
nagA: N-acetylglucosamine-6-phosphate deacetylase.
 
  
 0.746
nagE
PTS-II-BC-nag: PTS system, N-acetylglucosamine-specific IIBC component.
 
  
 0.667
ptsP
PTS_I_fam: phosphoenolpyruvate-protein phosphotransferase; Belongs to the PEP-utilizing enzyme family.
 
  
 0.635
DM40_949
Putative N-acetylglucosamine kinase.
     0.552
DM40_166
Aldo/keto reductase family protein.
       0.550
DM40_4847
Bifunctional NMN adenylyltransferase/Nudix hydrolase; Belongs to the Nudix hydrolase family.
  
  
 0.483
DM40_571
Bacterial regulatory s, lacI family protein.
  
     0.471
DM40_4978
Bacterial regulatory s, gntR family protein.
  
    0.436
DM40_4352
Bacterial regulatory s, gntR family protein.
  
    0.431
DM40_2690
Helix-turn-helix domain protein.
   
    0.424
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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