STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
DM40_1689lcrH_SycD: type III secretion low calcium response chaperone LcrH/SycD. (611 aa)    
Predicted Functional Partners:
DM40_2720
Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD family protein; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
  
 
 0.868
cyp18
Peptidyl-prolyl cis-trans isomerase cyp18; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
  
 
 0.868
DM40_943
Tetratricopeptide repeat family protein.
 
 
0.865
DM40_941
Tetratricopeptide repeat family protein.
 
 
0.864
DM40_942
Tetratricopeptide repeat family protein.
 
 
0.864
DM40_938
Tetratricopeptide repeat family protein.
 
 
0.863
htpG
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein; Molecular chaperone. Has ATPase activity.
  
 0.845
DM40_2711
NDH_I_M: proton-translocating NADH-quinone oxidoreductase, chain M family protein.
    
 
 0.844
DM40_2887
NDH_I_M: proton-translocating NADH-quinone oxidoreductase, chain M family protein.
    
 
 0.844
DM40_5643
Hypothetical protein.
    
 0.836
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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