STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_1692Fdh-alpha: formate dehydrogenase, alpha subunit. (983 aa)    
Predicted Functional Partners:
DM40_1691
NADH-dependent formate dehydrogenase delta subunit FdsD family protein.
 
 0.999
DM40_1693
NADH-ubiquinone oxidoreductase-F iron-sulfur binding region family protein.
 
 0.998
DM40_1694
Thioredoxin-like [2Fe-2S] ferredoxin family protein.
 
 0.998
fdxH
FDH-beta: formate dehydrogenase, beta subunit.
  
 
 0.973
DM40_3988
formate-DH-gamm: formate dehydrogenase, gamma subunit.
  
 
 0.972
DM40_3985
Molybdopterin oxidoreductase Fe4S4 domain protein.
 
 
 0.921
DM40_5106
Fdh-alpha: formate dehydrogenase, alpha subunit.
  
  
 
0.917
fghA
S-formylglutathione hydrolase; Serine hydrolase involved in the detoxification of formaldehyde.
    
  0.902
kynB
Arylformamidase; Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation.
    
  0.900
hutG
hutG_amidohyd: N-formylglutamate deformylase.
     
  0.900
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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