STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_172EAL domain protein. (424 aa)    
Predicted Functional Partners:
DM40_4512
GGDEF: diguanylate cyclase domain protein.
 
  
 0.762
DM40_4
GGDEF: diguanylate cyclase domain protein.
  
  
 0.753
DM40_1853
GGDEF: diguanylate cyclase domain protein.
  
  
 0.700
DM40_2003
GGDEF: diguanylate cyclase domain protein.
  
    0.699
DM40_3599
Hypothetical protein.
  
     0.682
DM40_3401
Diguanylate cyclase.
 
  
 0.679
ycgR
pilZ domain protein; Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)-dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility.
  
  
 0.673
DM40_2217
GGDEF: diguanylate cyclase domain protein.
 
  
 0.667
DM40_4105
GGDEF: diguanylate cyclase domain protein.
 
  
 0.661
DM40_4616
GGDEF: diguanylate cyclase domain protein.
 
  
 0.658
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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