STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_17624Fe-4S binding domain protein; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. (107 aa)    
Predicted Functional Partners:
sdhA
sdhA_forward: succinate dehydrogenase, flavoprotein subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
  
 0.850
sdhA-2
sdhA_forward: succinate dehydrogenase, flavoprotein subunit.
  
 0.850
DM40_1121
Glutamine amidotransferases class-II family protein.
     
 0.802
DM40_5427
pyrD_sub1_fam: dihydroorotate dehydrogenase family domain protein.
    
 0.686
DM40_1031
Hypothetical protein; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein.
  
 0.675
DM40_540
Hypothetical protein; Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein.
  
 0.675
uca
Urea_carbox: urea carboxylase.
    
  0.619
DM40_4656
Bacterial NAD-glutamate dehydrogenase family protein.
  
  
  0.571
DM40_4283
Rhodanese-like domain protein.
     
 0.527
DM40_3297
Acetyltransferase family protein.
   
 0.512
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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