STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
DM40_1776Rieske [2Fe-2S] domain protein. (136 aa)    
Predicted Functional Partners:
DM40_1774
Pseudouridine synthase, RluA family protein; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
       0.860
DM40_1775
HAD-SF-IA-v1: HAD hydrolase, IA, variant 1 family protein.
       0.860
DM40_1777
Clp protease family protein.
       0.816
thcD
Rhodocoxin reductase.
  
  
 0.574
nirB
nitri_red_nirB: nitrite reductase [NAD(P)H], large subunit; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
  
  
 0.574
DM40_4670
Pyridine nucleotide-disulfide oxidoreductase family protein.
  
  
 0.574
DM40_3053
soxA: sarcosine oxidase, alpha subunit; Belongs to the GcvT family.
  
 
 0.513
DM40_2365
Hypothetical protein.
  
     0.506
stcD
NADH:flavin oxidoreductase / NADH oxidase family protein.
  
 
 0.496
DM40_2359
FAD dependent oxidoreductase family protein.
  
 
 0.475
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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