STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_1819Cytochrome c oxidase caa3 assembly factor family protein. (290 aa)    
Predicted Functional Partners:
DM40_5109
Cytochrome c oxidase subunit III family protein.
 
  
 0.904
DM40_1821
Redoxin family protein.
 
   
 0.854
ctaD-2
ctaD_CoxA: cytochrome c oxidase, subunit I.
 
  
 0.853
DM40_1820
Hypothetical protein.
 
     0.821
coxB-3
coxB: cytochrome c oxidase, subunit II.
 
  
 0.661
coxB-2
coxB: cytochrome c oxidase, subunit II.
 
  
 0.654
DM40_1160
Cytochrome C1 family protein.
 
  
 0.597
coxB
Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
 
  
 0.589
DM40_293
Cytochrome c family protein.
 
    0.573
ctaD-3
ctaD_CoxA: cytochrome c oxidase, subunit I.
 
  
 0.511
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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