STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_1837ydjC-like family protein. (294 aa)    
Predicted Functional Partners:
hpnJ
Radical SAM superfamily protein.
 
   
 0.961
DM40_1838
hpnL: membrane family protein.
 
     0.947
DM40_1835
Glycosyl transferase 2 family protein.
 
   
 0.886
DM40_3322
Glycosyl transferase 2 family protein.
 
   
 0.651
DM40_3080
Hypothetical protein.
 
     0.618
DM40_3393
MMPL family protein.
 
     0.612
DM40_3320
3-beta hydroxysteroid dehydrogenase/isomerase family protein.
 
     0.590
hpnH
Radical SAM superfamily protein.
 
   
 0.573
shc
Hopene_cyclase: squalene-hopene cyclase.
 
     0.572
DM40_1839
smpA / OmlA family protein.
       0.529
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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