STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_1867NAD dependent epimerase/dehydratase family protein. (213 aa)    
Predicted Functional Partners:
DM40_2228
Putative permease family protein.
   
    0.810
DM40_3892
AAA ATPase domain protein.
   
    0.810
DM40_3244
Hypothetical protein.
   
    0.742
flgC
flgC: flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
    
   0.726
DM40_1866
Putative HTH-type transcriptional regulator ywnA.
 
  
 0.639
DM40_2537
Divergent AAA domain protein.
   
    0.621
DM40_3846
hxlR-like helix-turn-helix family protein.
 
  
 0.609
DM40_2221
hxlR-like helix-turn-helix family protein.
 
  
 0.592
DM40_3600
Hypothetical protein; Belongs to the UPF0337 (CsbD) family.
   
    0.535
DM40_3604
csbD-like family protein; Belongs to the UPF0337 (CsbD) family.
   
    0.535
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.