STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_1869ABC transporter family protein. (257 aa)    
Predicted Functional Partners:
DM40_1870
Binding--dependent transport system inner membrane component family protein.
 
 0.993
DM40_1871
Bacterial extracellular solute-binding family protein.
 
 
 0.986
DM40_4268
Binding--dependent transport system inner membrane component family protein.
 
 0.920
DM40_4267
ABC transporter family protein; Belongs to the ABC transporter superfamily.
  
  
 
0.907
DM40_4269
Bacterial extracellular solute-binding family protein.
  
 
 0.817
DM40_3678
Binding--dependent transport system inner membrane component family protein.
 
 
 0.743
DM40_3679
Binding--dependent transport system inner membrane component family protein.
 
 
 0.730
DM40_2362
Binding--dependent transport system inner membrane component family protein.
 
 
 0.712
DM40_2361
Binding--dependent transport system inner membrane component family protein.
 
 
 0.710
DM40_595
Binding--dependent transport system inner membrane component family protein.
 
 
 0.709
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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