STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DM40_187Hypothetical protein. (106 aa)    
Predicted Functional Partners:
gshA
gshA_ferroox: glutamate--cysteine ligase.
  
     0.740
DM40_2986
Hypothetical protein.
  
     0.738
DM40_2079
Hypothetical protein.
  
     0.664
DM40_2885
Hypothetical protein.
  
     0.660
sdhD
Succ_dehyd_anc: succinate dehydrogenase, hydrophobic membrane anchor protein.
  
     0.634
sdhD-2
Succ_dehyd_anc: succinate dehydrogenase, hydrophobic membrane anchor protein.
  
     0.634
DM40_375
Phasin: phasin family domain protein.
  
     0.632
DM40_2774
Phasin: phasin family domain protein.
  
     0.611
DM40_352
Hypothetical protein; FAD linked oxidase, C-terminal domain protein.
  
     0.605
DM40_1100
resB-like family protein.
  
     0.595
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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