STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_1870Binding--dependent transport system inner membrane component family protein. (558 aa)    
Predicted Functional Partners:
DM40_1871
Bacterial extracellular solute-binding family protein.
 
 
 0.995
DM40_1869
ABC transporter family protein.
 
 
 0.988
DM40_4268
Binding--dependent transport system inner membrane component family protein.
  
  
 
0.916
DM40_4269
Bacterial extracellular solute-binding family protein.
  
 
 0.905
DM40_4267
ABC transporter family protein; Belongs to the ABC transporter superfamily.
 
 
 0.870
phnS
phnS: 2-aminoethylphosphonate ABC transporter, 2-aminoethylphosphonate binding protein.
 
 
 0.792
DM40_3674
Bacterial extracellular solute-binding family protein.
  
 
 0.756
DM40_3269
Bacterial extracellular solute-binding family protein.
 
 
 0.689
DM40_1895
Bacterial extracellular solute-binding family protein.
 
 
 0.687
DM40_87
Periplasmic binding family protein.
  
  
 0.563
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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