STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DM40_1894Binding--dependent transport system inner membrane component family protein. (274 aa)    
Predicted Functional Partners:
DM40_1895
Bacterial extracellular solute-binding family protein.
 
  
  0.967
DM40_1892
ABC transporter family protein; Belongs to the ABC transporter superfamily.
 
  
  0.950
modA
modA: molybdate ABC transporter, periplasmic molybdate-binding protein.
 
 0.943
cysW
permease_CysW: sulfate ABC transporter, permease protein CysW.
 
 
0.930
DM40_1893
Binding--dependent transport system inner membrane component family protein.
 
 
 
0.923
DM40_110
Phosphoadenosine phosphosulfate reductase family protein.
  
 
 0.919
cysN
Sulfate adenylyltransferase, large subunit; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.
  
 
 0.918
cysA
Sulfate ABC transporter, ATP-binding family protein; Part of the ABC transporter complex CysAWTP involved in sulfate/thiosulfate import. Responsible for energy coupling to the transport system.
 
 
 0.917
DM40_5202
Bacterial extracellular solute-binding family protein.
  
 0.904
DM40_3867
ABC transporter family protein.
 
 
 0.875
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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