STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bkdBLipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex. (445 aa)    
Predicted Functional Partners:
bkdA2
2-oxoisovalerate dehydrogenase subunit beta.
 
 0.999
lpdA
lipoamide_DH: dihydrolipoyl dehydrogenase.
 
 0.998
bkdA1
2-oxoisovalerate dehydrogenase subunit alpha.
 
 0.996
sucA
2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component.
 0.996
acoB
Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta.
 
 0.994
lpdA-2
lipoamide_DH: dihydrolipoyl dehydrogenase.
 0.989
acoA
Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha.
 
 0.978
lpdA-3
lipoamide_DH: dihydrolipoyl dehydrogenase.
0.976
aceE
Pyruvate dehydrogenase (acetyl-transferring), homodimeric type; Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).
  
 0.961
DM40_5406
trkA-N domain protein.
 0.941
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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