STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
bkdBLipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex. (445 aa)    
Predicted Functional Partners:
bkdA2
2-oxoisovalerate dehydrogenase subunit beta.
 
 0.999
lpdA
lipoamide_DH: dihydrolipoyl dehydrogenase.
 
 0.999
bkdA1
2-oxoisovalerate dehydrogenase subunit alpha.
 
 0.998
lpdA-2
lipoamide_DH: dihydrolipoyl dehydrogenase.
 
 0.993
acoB
Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta.
 
 0.984
lpdA-3
lipoamide_DH: dihydrolipoyl dehydrogenase.
 
0.984
DM40_3289
cit_synth_II: 2-methylcitrate synthase/citrate synthase II family protein; Belongs to the citrate synthase family.
  
 0.973
sucA
2oxo_dh_E1: oxoglutarate dehydrogenase (succinyl-transferring), E1 component.
 0.970
acoA
Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha.
 
 0.950
DM40_4417
Phosphate acetyl/butaryl transferase family protein.
  
 
 0.929
Your Current Organism:
Burkholderia cenocepacia
NCBI taxonomy Id: 95486
Other names: ATCC BAA-245, ATCC:BAA:245, B. cenocepacia, Burkholderia cenocepacia Vandamme et al. 2003, Burkholderia cepacia genomovar III, Burkholderia cepacia genomovar IIIb, CCM 4899, CCUG 48434, DSM 16553, LMG 16656, LMG:16656, NCTC 13227
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